Stem-loop mtr-MIR5558

Accession

MI0019085

Description

Medicago truncatula mtr-MIR5558 precursor miRNA

Literature search

1 open access papers mention mtr-MIR5558
(2 sentences)

Sequence

60985 reads, 470.0 reads per million, 111 experiments

ugaccucauaUUUUCCAAUUCUAAGUCUAUCCcuaugaauuccaaugaauuccgagaUAGAUUUAGAAUUAGAAAAGcuaaggucc
.(((((....(((((.(((((((((((((((.(...((((((....)))))).).))))))))))))))).)))))....))))).

Structure

u     caua     C               C uau      c 
 gaccu    UUUUC AAUUCUAAGUCUAUC c   gaauuc a
 |||||    ||||| ||||||||||||||| |   ||||||  
 cugga    AAAAG UUAAGAUUUAGAUag g   cuuaag a
c     aucG     A               a --c      u 

Annotation confidence High

Genome context

chr5: 19731787-19731872 [+]

Mature mtr-miR5558-5p

• Accession: MIMAT0022219
• Description: Medicago truncatula mtr-miR5558-5p mature miRNA
• Sequence: 11 - UUUUCCAAUUCUAAGUCUAUCC - 32
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR5558-3p

• Accession: MIMAT0022220
• Description: Medicago truncatula mtr-miR5558-3p mature miRNA
• Sequence: 58 - UAGAUUUAGAAUUAGAAAAG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553