Stem-loop gma-MIR162a

Accession

MI0007208

Description

Glycine max gma-MIR162a precursor miRNA

Literature search

11 open access papers mention gma-MIR162a
(16 sentences)

Sequence

2724871 reads, 6065.0 reads per million, 178 experiments

gugaagucacuGGAUGCAGCGGUUCAUCGAUCucuuccugaaucguuguuuaacaucagaaccaugaaucgaUCGAUAAACCUCUGCAUCCAGCgcucacuc
((((.(.(.((((((((((.((((.(((((((..(((.((..((..(((...)))...))..)).)))..))))))).)))).)))))))))).))))))..

Structure

--    a u a          C    C       uc   c  aa  -gu   u 
  guga g c cuGGAUGCAG GGUU AUCGAUC  uuc ug  uc   ugu  
  |||| | | |||||||||| |||| |||||||  ||| ||  ||   ||| u
  cacu c g GACCUACGUC CCAA UAGCUag  aag ac  ag   aca  
cu    - - C          U    A       cu   u  ca  acu   a 

Annotation confidence High

Genome context

chr6: 20376062-20376163 [-]

Mature gma-miR162a-5p

• Accession: MIMAT0054017
• Description: Glycine max gma-miR162a-5p mature miRNA
• Sequence: 12 - GGAUGCAGCGGUUCAUCGAUC - 32
• Evidence: experimental ; unknown

Mature gma-miR162a-3p

• Accession: MIMAT0007353
• Description: Glycine max gma-miR162a-3p mature miRNA
• Sequence: 73 - UCGAUAAACCUCUGCAUCCAGC - 94
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553