Stem-loop mtr-MIR5741c

Accession

MI0019684

Description

Medicago truncatula mtr-MIR5741c precursor miRNA

Sequence

5082 reads, 39.0 reads per million, 111 experiments

aaacuauaugaaAUCUGUCAAUUUAGUCGUUAAaauauaugaaaauauuucaauuuaguccguaacaucuuaauaugauggacuaaauugacgaauuucauauaaaucagugauuacuuauuacauuuacacgguuUAGGGACUAAAUUGAUGGUUUcuucuagguu
...(((...((((((.((((((((((((.(((((.(((((((((.....((((((((((((((..(((......)))))))))))))))))....))))))))).....(((((.....)))))..........))))).))))))))))))))))))...)))...

Structure

aaa   uau      U            G     -----------------------------a         auauu              aa   cu 
   cua   gaaAUC GUCAAUUUAGUC UUAAa                              uauaugaaa     ucaauuuaguccgu  cau  u
   |||   |||||| |||||||||||| |||||                              |||||||||     ||||||||||||||  |||   
   gau   cUUUGG UAGUUAAAUCAG GAUuu                              auauacuuu     aguuaaaucaggua  gua  a
uug   cuu      -            G     ggcacauuuacauuauucauuagugacuaa         -aagc              --   ua 

Annotation confidence Low

Genome context

chr5: 13211983-13212149 [+]

Mature mtr-miR5741c-5p

• Accession: MIMAT0055251
• Description: Medicago truncatula mtr-miR5741c-5p mature miRNA
• Sequence: 13 - AUCUGUCAAUUUAGUCGUUAA - 33
• Evidence: experimental ; unknown

Mature mtr-miR5741c-3p

• Accession: MIMAT0023139
• Description: Medicago truncatula mtr-miR5741c-3p mature miRNA
• Sequence: 137 - UAGGGACUAAAUUGAUGGUUU - 157
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553