Stem-loop mtr-MIR169g

Accession

MI0005604

Description

Medicago truncatula mtr-MIR169g precursor miRNA

Literature search

14 open access papers mention mtr-MIR169g
(54 sentences)

Sequence

5107 reads, 60.0 reads per million, 111 experiments

auaugCAGCCAAGGAUGACUUGCCGGcgagccucuuucgauacuuuuaugacauaauuaaucauguggauagccaagguacuaaacucacuuugcacuaaaacaaauauuuuugcuuuagugcaaacuuaguuuaggcgcuucgcaacggcuagucaaauguccuaguuccaaugugauugguuguccGGCAAGUCGUCUCUGGCUACgua
.((((.(((((.((((((((((((((((((.....)))).............(((((((((((((((((..((.(((...(((((((...(((((((((((.((((....)))).)))))))))))...)))))))...))).))....(((((.........)))))))).)))))))))))))))))))))))))))).))))).))))

Structure

a    C     A              cgagccucuuucgauacuuuuaugac              -   ---------------------ua  c   gua       cac           a    u 
 uaug AGCCA GGAUGACUUGCCGG                          auaauuaaucaugu gga                       gc aag   cuaaacu   uuugcacuaaa caaa a
 |||| ||||| ||||||||||||||                          |||||||||||||| |||                       || |||   |||||||   ||||||||||| ||||  
 augC UCGGU UCUGCUGAACGGcc                          uguugguuagugua ccu                       cg uuc   gauuuga   aaacgugauuu guuu u
-    A     C              --------------------------              a   ugauccuguaaacugaucggcaa  c   gcg       uuc           c    u 

Annotation confidence High

Genome context

chr6: 3029966-3030176 [+]

Mature mtr-miR169g-5p

• Accession: MIMAT0011090
• Description: Medicago truncatula mtr-miR169g-5p mature miRNA
• Sequence: 6 - CAGCCAAGGAUGACUUGCCGG - 26
• Evidence: experimental ; Illumina [1]

Mature mtr-miR169g-3p

• Accession: MIMAT0054776
• Description: Medicago truncatula mtr-miR169g-3p mature miRNA
• Sequence: 189 - GGCAAGUCGUCUCUGGCUAC - 208
• Evidence: experimental ; unknown

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553