Stem-loop mtr-MIR5229b

Accession

MI0018319

Description

Medicago truncatula mtr-MIR5229b precursor miRNA

Sequence

37359 reads, 64.0 reads per million, 105 experiments

cuuuuuuuguUUAGCAGGAAGAGUGACUAUGgaggcugacaaaaggguuggucacguUAGUCACUCUUCCUGUUAACCaaugaaauaag
.((((.(((.(((((((((((((((((((..(.(((((((......))))))).)..))))))))))))))))))).))).))))....

Structure

---c    u   u                   UG a       aa 
    uuuu uug UUAGCAGGAAGAGUGACUA  g ggcugac  a
    |||| ||| |||||||||||||||||||  | |||||||   
    aaag aaC AAUUGUCCUUCUCACUGAU  c cugguug  a
gaau    u   C                   ug a       gg 

Annotation confidence High

Genome context

chr5: 11293234-11293322 [+]

Mature mtr-miR5229b-5p

• Accession: MIMAT0021214
• Description: Medicago truncatula mtr-miR5229b-5p mature miRNA
• Sequence: 11 - UUAGCAGGAAGAGUGACUAUG - 31
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR5229b-3p

• Accession: MIMAT0055090
• Description: Medicago truncatula mtr-miR5229b-3p mature miRNA
• Sequence: 58 - UAGUCACUCUUCCUGUUAACC - 78
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553