Stem-loop mtr-MIR5754

Accession

MI0019681

Description

Medicago truncatula mtr-MIR5754 precursor miRNA

Sequence

1167 reads, 7.0 reads per million, 83 experiments

ugggauaaagauuccaugaugaguaUAUUGCACUCAUCUUCCAUGGCuguuuucuuccuccaaggaugucaauugugcCAUGGAGAAGAGUGCAAUAAAcuuguugugguaucuaucgacaaga
...(((..((((.(((((((((((.((((((((((.(((.(((((((.(((..(.((((...)))).)..)))...)))))))))).)))))))))).))))))))))).))))))).......

Structure

----ugg   aa    u           a          A   U       --u   uu u    c 
       gau  agau ccaugaugagu UAUUGCACUC UCU CCAUGGC   guu  c uccu  
       |||  |||| ||||||||||| |||||||||| ||| |||||||   |||  | |||| c
       cua  ucua gguguuguucA AUAACGUGAG AGA GGUACcg   uaa  g agga  
agaacag   --    u           A          A   -       ugu   cu u    a 

Annotation confidence High

Genome context

chr4: 24463751-24463874 [-]

Mature mtr-miR5754-5p

• Accession: MIMAT0023136
• Description: Medicago truncatula mtr-miR5754-5p mature miRNA
• Sequence: 26 - UAUUGCACUCAUCUUCCAUGGC - 47
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5754-3p

• Accession: MIMAT0055250
• Description: Medicago truncatula mtr-miR5754-3p mature miRNA
• Sequence: 79 - CAUGGAGAAGAGUGCAAUAAA - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553