Stem-loop mtr-MIR5239

Accession

MI0018338

Description

Medicago truncatula mtr-MIR5239 precursor miRNA

Sequence

697851 reads, 6087.0 reads per million, 111 experiments

auguuucguuUGGGAGAAAAGAUAGAAUGUGgaauucgauagacaugauccguaguuuacuggaucguccacuaagccACGUUCUAUAUUUUCUCCCcaccccaaaaccug
...........(((((((((.(((((((((((.........(((..((((((........))))))))).......))))))))))).)))))))))..............

Structure

---auguuucguuU         G           aauucgaua   au      uag 
              GGGAGAAAA AUAGAAUGUGg         gac  gauccg   u
              ||||||||| |||||||||||         |||  ||||||    
              CCCUCUUUU UAUCUUGCAcc         cug  cuaggu   u
guccaaaaccccac         A           --gaaucac   --      cau 

Annotation confidence Medium

Genome context

AC225474.24: 38945-39055 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mtr-MIR5239

Mature mtr-miR5239-5p

• Accession: MIMAT0021233
• Description: Medicago truncatula mtr-miR5239-5p mature miRNA
• Sequence: 11 - UGGGAGAAAAGAUAGAAUGUG - 31
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR5239-3p

• Accession: MIMAT0055107
• Description: Medicago truncatula mtr-miR5239-3p mature miRNA
• Sequence: 79 - ACGUUCUAUAUUUUCUCCC - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553