miRBase entry: mtr-MIR5037b

Stem-loop mtr-MIR5037b


Accession
MI0019696
Description
Medicago truncatula mtr-MIR5037b precursor miRNA


Sequence

29475 reads, 363.0 reads per million, 110 experiments
agcauucaguAACCCUCAAAGGCUUCCACGGcaucaaguuacauguaaaugugaagucGUGGAAGUGCUUCUUGGGUUUccgaaggcuu
(((.(((.(.(((((...((((((((((((((.(((.(((.......))).))).))))))))))).)))...))))).).))).))).

Structure
-   a   a u     UCA   -           a   a   ac 
 agc uuc g AACCC   AAG GCUUCCACGGc uca guu  a
 ||| ||| | |||||   ||| ||||||||||| ||| |||  u
 ucg aag c UUGGG   UUC UGAAGGUGcug agu uaa  g
u   g   c U     UUC   G           a   g   au 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr7: 23954301-23954389 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from mtr-MIR5037b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5037b-5p

Accession MIMAT0023151
Description Medicago truncatula mtr-miR5037b-5p mature miRNA
Sequence 11 - AACCCUCAAAGGCUUCCACGG - 31
Evidence experimental
Illumina [1]

Mature mtr-miR5037b-3p

Accession MIMAT0055260
Description Medicago truncatula mtr-miR5037b-3p mature miRNA
Sequence 59 - GUGGAAGUGCUUCUUGGGUUU - 79
Evidence experimental
unknown

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553