Stem-loop gma-MIR171t

Accession

MI0019781

Description

Glycine max gma-MIR171t precursor miRNA

Literature search

15 open access papers mention gma-MIR171t
(36 sentences)

Sequence

102715 reads, 680.0 reads per million, 176 experiments

gaagugcuguaugaagcacaaaucaAGGUAUUGGCGCGCCUCAAUUugaagucaugguuaacaugaaacaagccauguaguuuuaaUUGAGCCGCGUCAAUAUCUCAucuugcacuu
...(((((......)))))......(((((((((((((.(((((((.(((.((((((((...........))))))).).))).))))))).)))))))))))))............

Structure

gaagugcuguaugaagcacaaauca             C       u   g -       aaca 
                         AGGUAUUGGCGCG CUCAAUU gaa u caugguu    u
                         ||||||||||||| ||||||| ||| | |||||||    g
                         UCUAUAACUGCGC GAGUUaa uuu a guaccga    a
-------------uucacguucuAC             C       u   g u       acaa 

Annotation confidence High

Genome context

chr6: 49564865-49564981 [-]

Mature gma-miR171t-5p

• Accession: MIMAT0054348
• Description: Glycine max gma-miR171t-5p mature miRNA
• Sequence: 26 - AGGUAUUGGCGCGCCUCAAUU - 46
• Evidence: experimental ; unknown

Mature gma-miR171t-3p

• Accession: MIMAT0023236
• Description: Glycine max gma-miR171t-3p mature miRNA
• Sequence: 87 - UUGAGCCGCGUCAAUAUCUCA - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553