Stem-loop mtr-MIR5214

Accession

MI0018254

Description

Medicago truncatula mtr-MIR5214 precursor miRNA

Sequence

218070 reads, 2025.0 reads per million, 104 experiments

ucccgucuuucuccguagucUAGCUCUAUUAACAAUUAAAUUcaccguugaagguagauUUAAUUGUUGAUAGAGCUagaccaucggagcgagacccuu
....(((((.(((((..(((((((((((((((((((((((((.(((......))).)))))))))))))))))))))))))...))))).)))))....

Structure

uccc     u     -ua                         c   gu 
    gucuu cuccg   gucUAGCUCUAUUAACAAUUAAAUU acc  u
    ||||| |||||   ||||||||||||||||||||||||| |||   
    cagag gaggc   cagaUCGAGAUAGUUGUUAAUUuag ugg  g
uucc     c     uac                         a   aa 

Annotation confidence Medium

Genome context

chr3: 1385082-1385180 [-]

Mature mtr-miR5214-5p

• Accession: MIMAT0027101
• Description: Medicago truncatula mtr-miR5214-5p mature miRNA
• Sequence: 21 - UAGCUCUAUUAACAAUUAAAUU - 42
• Evidence: experimental ; Illumina [3]

Mature mtr-miR5214-3p

• Accession: MIMAT0021148
• Description: Medicago truncatula mtr-miR5214-3p mature miRNA
• Sequence: 60 - UUAAUUGUUGAUAGAGCU - 77
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


3. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105