Stem-loop gma-MIR397a

Accession

MI0018645

Description

Glycine max gma-MIR397a precursor miRNA

Literature search

15 open access papers mention gma-MIR397a
(65 sentences)

Sequence

1724732 reads, 1993.0 reads per million, 178 experiments

agagaaacaucAUUGAGUGCAGCGUUGAUGAAguuucacucucaucucagguagaugcuuaauuuauaguguuauugucaUCGACACUGCACUCAAUCAUGuuuuucu
((((((((((.(((((((((((.(((((((((((..((((..(((((.....)))))..........))))..))).)))))))).))))))))))).))))))))))

Structure

          c           C        -   uu    --------cu     c 
agagaaacau AUUGAGUGCAG GUUGAUGA Agu  cacu          caucu a
|||||||||| ||||||||||| |||||||| |||  ||||          ||||| g
ucuuuuuGUA UAACUCACGUC CAGCUacu uua  guga          guaga g
          C           A        g   uu    uauuuaauuc     u 

Annotation confidence High

Genome context

chr8: 4644313-4644420 [-]

Mature gma-miR397a-5p

• Accession: MIMAT0021627
• Description: Glycine max gma-miR397a-5p mature miRNA
• Sequence: 12 - AUUGAGUGCAGCGUUGAUGAA - 32
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR397a-3p

• Accession: MIMAT0054240
• Description: Glycine max gma-miR397a-3p mature miRNA
• Sequence: 81 - UCGACACUGCACUCAAUCAUG - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553