Stem-loop mtr-MIR5745b

Accession

MI0019690

Description

Medicago truncatula mtr-MIR5745b precursor miRNA

Sequence

503 reads, 5.0 reads per million, 104 experiments

uuugaaagagUUUAAUUUAUAUACAUCGUCAguguacaaaaguuuuaauugaugugacaacguauuauuggaugcauguauaacauuuucauacacUGACGGUGUAUAUAAAUUAAACUCAuuuugaaa
((((((((((((((((((((((((((((((((((((..(((((.(((....((((..(((.......)))...))))...))).)))))..))))))))))))))))))))))))))))).))))))).

Structure

-       -                             ca     u   auug    -ga   cg 
 uuugaaa gagUUUAAUUUAUAUACAUCGUCAgugua  aaagu uua    augu   caa  u
 ||||||| |||||||||||||||||||||||||||||  ||||| |||    ||||   |||  a
 aaguuuu CUCAAAUUAAAUAUAUGUGGCAGUcacau  uuuua aau    uacg   guu  u
a       A                             ac     c   -aug    uag   au 

Annotation confidence High

Genome context

chr7: 26377742-26377870 [+]

Mature mtr-miR5745b-5p

• Accession: MIMAT0023145
• Description: Medicago truncatula mtr-miR5745b-5p mature miRNA
• Sequence: 11 - UUUAAUUUAUAUACAUCGUCA - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5745b-3p

• Accession: MIMAT0055255
• Description: Medicago truncatula mtr-miR5745b-3p mature miRNA
• Sequence: 97 - UGACGGUGUAUAUAAAUUAAACUCA - 121
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553