Stem-loop mtr-MIR5225b

Accession

MI0019687

Description

Medicago truncatula mtr-MIR5225b precursor miRNA

Sequence

93 reads, 3.0 reads per million, 50 experiments

gggacuuuagUCGCAGGAGAGAUGACACCUUCuauuacuaaugacaugauuuuauagcaauuuuaacagaaguugucaucuuucuuugacugaaguuca
.((((((((((((.(((((((((((((.(((((.(((..(.((..(((....)))..)).)..))).))))).))))))))))))))))))))))))).

Structure

g            C             C     a   cu a  ac   a 
 ggacuuuagUCG AGGAGAGAUGACA CUUCu uua  a ug  aug u
 |||||||||||| ||||||||||||| ||||| |||  | ||  |||  
 cuugaagucagu uucuuucuacugu gaaga aau  u ac  uau u
a            -             u     c   uu a  ga   u 

Annotation confidence Not enough data

Genome context

chr6: 2359911-2360009 [+]

Mature mtr-miR5225b-5p

• Accession: MIMAT0023142
• Description: Medicago truncatula mtr-miR5225b-5p mature miRNA
• Sequence: 11 - UCGCAGGAGAGAUGACACCUUC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553