Stem-loop mtr-MIR169e

Accession

MI0005579

Description

Medicago truncatula mtr-MIR169e precursor miRNA

Literature search

12 open access papers mention mtr-MIR169e
(50 sentences)

Sequence

11838 reads, 270.0 reads per million, 111 experiments

gaaaugGAGCCAAGGAUGACUUGCCGGUauauuaguuugucgcuaaagcuaacuagcuuuaguuguuggguacucccGGCAGGUCAUCCUUCGGCUAuauu
..((((.((((((((((((((((((((.....((.((....(((((((((....)))))))))....)).))...)))))))))))))))).)))).))))

Structure

ga    G    -                Uauau  g  uguc         a 
  aaug AGCC AAGGAUGACUUGCCGG     ua uu    gcuaaagcu a
  |||| |||| ||||||||||||||||     || ||    |||||||||  
  uuau UCGG UUCCUACUGGACGGcc     au gg    ugauuucga c
--    A    C                --cuc  g  uugu         u 

Annotation confidence High

Genome context

chr2: 13473516-13473616 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR169e

Mature mtr-miR169e-5p

• Accession: MIMAT0011065
• Description: Medicago truncatula mtr-miR169e-5p mature miRNA
• Sequence: 7 - GAGCCAAGGAUGACUUGCCGGU - 28
• Evidence: not_experimental

Mature mtr-miR169e-3p

• Accession: MIMAT0022934
• Description: Medicago truncatula mtr-miR169e-3p mature miRNA
• Sequence: 78 - GGCAGGUCAUCCUUCGGCUA - 97
• Evidence: experimental ; Illumina [1]

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553