Stem-loop mtr-MIR5264

Accession

MI0018376

Description

Medicago truncatula mtr-MIR5264 precursor miRNA

Sequence

21287 reads, 203.0 reads per million, 111 experiments

cuuauguggguuugUUGAUCAAGGACUUUGCAUCuuuuucuuuuguauuguuaugaaaauauaucaaugaauaagaUGCAAAGUCUUACUUGAUCAACaaacucacgaa
.....(((((((((((((((((((((((((((((((.(((...((((((........)))))).....))).)))))))))))))...))))))))))))))))))...

Structure

cuuau                  ---             u   --uuu      guu 
     guggguuugUUGAUCAAG   GACUUUGCAUCuu uuc     uguauu   a
     ||||||||||||||||||   ||||||||||||| |||     ||||||    
     cacucaaaCAACUAGUUC   CUGAAACGUagaa aag     auauaa   u
--aag                  AUU             u   uaacu      aag 

Annotation confidence High

Genome context

chr3: 17090360-17090468 [-]

Mature mtr-miR5264-5p

• Accession: MIMAT0021273
• Description: Medicago truncatula mtr-miR5264-5p mature miRNA
• Sequence: 15 - UUGAUCAAGGACUUUGCAUC - 34
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR5264-3p

• Accession: MIMAT0055138
• Description: Medicago truncatula mtr-miR5264-3p mature miRNA
• Sequence: 77 - UGCAAAGUCUUACUUGAUCAAC - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553