Stem-loop gma-MIR394e

Accession

MI0019775

Description

Glycine max gma-MIR394e precursor miRNA

Literature search

8 open access papers mention gma-MIR394e
(12 sentences)

Sequence

177563 reads, 399.0 reads per million, 167 experiments

cauagccauuUUGGCAUUCUGUCCACCUCCauuaauauuaaauggguuguuuuagaaucacccccaaaaugguggcaguuggAGGUGGCCAGUAGGCCAAACGGgcucugu
((.((((..((((((...(((.(((((((((....(((((..((((.((.........))..))))...))))).....))))))))).)))...))))))..)))).)).

Structure

-  u    au      AUU   U         -uuaa     -aa    -u  uuu 
 ca agcc  uUUGGC   CUG CCACCUCCa     uauua   uggg  ug   u
 || ||||  ||||||   ||| |||||||||     |||||   ||||  ||   a
 gu ucgG  AAACCG   GAC GGUGGAggu     guggu   accc  ac   g
u  c    GC      GAU   C         ugacg     aaa    cc  uaa 

Annotation confidence High

Genome context

chr5: 36014286-36014396 [+]

Mature gma-miR394e-5p

• Accession: MIMAT0023230
• Description: Glycine max gma-miR394e-5p mature miRNA
• Sequence: 11 - UUGGCAUUCUGUCCACCUCC - 30
• Evidence: experimental ; Illumina [1]

Mature gma-miR394e-3p

• Accession: MIMAT0054342
• Description: Glycine max gma-miR394e-3p mature miRNA
• Sequence: 83 - AGGUGGCCAGUAGGCCAAACGG - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553