Stem-loop gma-MIR162c

Accession

MI0018659

Description

Glycine max gma-MIR162c precursor miRNA

Literature search

10 open access papers mention gma-MIR162c
(16 sentences)

Sequence

2864713 reads, 6477.0 reads per million, 178 experiments

gagaugaggugaagucacUGGAGGCAGCGGUUCAUCGAUCUcuuccugaauuugguuguggaagaacacaaagcaagaaucggUCGAUAAACCUCUGCAUCCAGcgcucacuuugccuc
.....(((((((((((.(((((.((((.((((.(((((((..(((.((..(((((((.......))).)))).)).)))..))))))).)))).)))).))))).)...))))))))))

Structure

gagau          --- a     G    C    C       Uc   c  aa    -   gu 
     gaggugaagu   c cUGGA GCAG GGUU AUCGAUC  uuc ug  uuug guu  g
     ||||||||||   | ||||| |||| |||| |||||||  ||| ||  |||| |||  g
     cuccguuuca   g GACCU CGUC CCAA UAGCUgg  aag ac  aaac caa  a
-----          cuc c     A    U    A       cu   a  -g    a   ga 

Annotation confidence High

Genome context

chr17: 9894786-9894904 [+]

Mature gma-miR162c-5p

• Accession: MIMAT0054248
• Description: Glycine max gma-miR162c-5p mature miRNA
• Sequence: 19 - UGGAGGCAGCGGUUCAUCGAUCU - 41
• Evidence: experimental ; unknown

Mature gma-miR162c-3p

• Accession: MIMAT0021644
• Description: Glycine max gma-miR162c-3p mature miRNA
• Sequence: 84 - UCGAUAAACCUCUGCAUCCAG - 104
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553