Stem-loop mtr-MIR530

Accession

MI0019701

Description

Medicago truncatula mtr-MIR530 precursor miRNA

Literature search

3 open access papers mention mtr-MIR530
(4 sentences)

Sequence

1686 reads, 13.0 reads per million, 107 experiments

agcuuuuaucUGCAUUUGCACCUGCACUUUCccuggcugcgucuguaacauauaaacaugugaauuaauuuguuuuauauauaaaauaaaauaaauuuauaauauuuaguaugaggaaggaccaagggcuAGGUGCAGAUGCAUAUGCAGAugaaugcc
.((.(((((((((((.((((.((((((((.((((...((.((((....(((((.((.((((.....((((((((((((.......))))))))))))....)))))).))))).....))))))))))..)))))))).)))).))))))))))).)).

Structure

a  u           U    C        -U    ggc  c    -guaa     a  c    gaauu            au 
 gc uuuaucUGCAU UGCA CUGCACUU  Cccu   ug gucu     cauau aa augu     aauuuguuuuau  a
 || ||||||||||| |||| ||||||||  ||||   || ||||     ||||| || ||||     ||||||||||||  u
 cg aaguAGACGUA ACGU GACGUGGA  ggga   ac cagg     guaug uu uaua     uuaaauaaaaua  a
c  u           U    A        uc    ---  -    aagga     a  -    -auau            aa 

Annotation confidence High

Genome context

AC235487.1: 38438-38596 [-]

Mature mtr-miR530-5p

• Accession: MIMAT0023156
• Description: Medicago truncatula mtr-miR530-5p mature miRNA
• Sequence: 11 - UGCAUUUGCACCUGCACUUUC - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR530-3p

• Accession: MIMAT0055265
• Description: Medicago truncatula mtr-miR530-3p mature miRNA
• Sequence: 131 - AGGUGCAGAUGCAUAUGCAGA - 151
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553