Stem-loop gma-MIR3522

Accession

MI0018650

Description

Glycine max gma-MIR3522 precursor miRNA

Literature search

10 open access papers mention gma-MIR3522
(29 sentences)

Sequence

35812221 reads, 33663.0 reads per million, 178 experiments

aggaucguccUGAGACCAAAUGAGCAGCUGAccacaugaugcagcuauguuugcuauucAGCUGCUCAUCUGUUCUCAGGucgcccu
(((..((.(((((((.((.((((((((((((.........(((....))).......)))))))))))).)).))))))).)).)))

Structure

   au  u       C  A            ccacaugau   g 
agg  cg ccUGAGA CA AUGAGCAGCUGA         gca c
|||  || ||||||| || ||||||||||||         |||  
ucc  gc GGACUCU GU UACUCGUCGAcu         ugu u
   -c  u       U  C            --uaucguu   a 

Annotation confidence High

Genome context

chr15: 4337688-4337774 [+]

Mature gma-miR3522-5p

• Accession: MIMAT0021633
• Description: Glycine max gma-miR3522-5p mature miRNA
• Sequence: 11 - UGAGACCAAAUGAGCAGCUGA - 31
• Evidence: experimental ; Illumina [1-3]

Mature gma-miR3522-3p

• Accession: MIMAT0054241
• Description: Glycine max gma-miR3522-3p mature miRNA
• Sequence: 60 - AGCUGCUCAUCUGUUCUCAGG - 80
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


3. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153