Stem-loop gma-MIR169p

Accession

MI0019756

Description

Glycine max gma-MIR169p precursor miRNA

Literature search

22 open access papers mention gma-MIR169p
(95 sentences)

Sequence

44703 reads, 293.0 reads per million, 172 experiments

gaguacgauuUGAGCCAAGGAUGACUUGCCGacauguggaaaagcuuaaucccuuuucaagguguugucGGCGAGGAAUCUGGGCUCAUUugugcucc
((((((((..((((((..((((..((((((((((....((((((........)))))).......))))))))))..)))).)))))).)))))))).

Structure

-        uu      AA    GA          ---ugug      cuu 
 gaguacga  UGAGCC  GGAU  CUUGCCGaca       gaaaag   a
 ||||||||  ||||||  ||||  ||||||||||       ||||||    
 cucguguU  ACUCGG  UCUA  GAGCGGcugu       cuuuuc   a
c        -U      -G    AG          uguggaa      ccu 

Annotation confidence High

Genome context

chr15: 14192081-14192178 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR169p

Mature gma-miR169p-5p

• Accession: MIMAT0023211
• Description: Glycine max gma-miR169p-5p mature miRNA
• Sequence: 11 - UGAGCCAAGGAUGACUUGCCG - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR169p-3p

• Accession: MIMAT0054326
• Description: Glycine max gma-miR169p-3p mature miRNA
• Sequence: 70 - GGCGAGGAAUCUGGGCUCAUU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553