Stem-loop gma-MIR398c

Accession

MI0017847

Description

Glycine max gma-MIR398c precursor miRNA

Literature search

17 open access papers mention gma-MIR398c
(80 sentences)

Sequence

95699600 reads, 78146.0 reads per million, 178 experiments

uucuacaGGGUCGUCCUGAGAUCACAUgaaguagaauauaagcagccauauuugcuucuugucucguguucucagcucaUGUGUUCUCAGGUCGCCCCUGcuggacuauu
.(((((((((.((.(((((((.(((((((.(((((((((((((((......))))))........)))))))..))))))))).))))))).)).))))).)))).....

Structure

----u    -     U  U       U       a  --       --------      cc 
     ucua caGGG CG CCUGAGA CACAUga gu  agaauau        aagcag  a
     |||| ||||| || ||||||| ||||||| ||  |||||||        ||||||   
     aggu GUCCC GC GGACUCU GUGUacu cg  ucuugug        uucguu  u
uuauc    c     C  U       U       -  ac       cucuguuc      ua 

Annotation confidence High

Genome context

chr8: 14229061-14229170 [-]

Mature gma-miR398c-5p

• Accession: MIMAT0054191
• Description: Glycine max gma-miR398c-5p mature miRNA
• Sequence: 8 - GGGUCGUCCUGAGAUCACAU - 27
• Evidence: experimental ; unknown

Mature gma-miR398c-3p

• Accession: MIMAT0020997
• Description: Glycine max gma-miR398c-3p mature miRNA
• Sequence: 80 - UGUGUUCUCAGGUCGCCCCUG - 100
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553