Stem-loop mtr-MIR5262

Accession

MI0018366

Description

Medicago truncatula mtr-MIR5262 precursor miRNA

Sequence

10451 reads, 91.0 reads per million, 111 experiments

uaaUGUGUCUGAAAUUGAGUCUAUugacagauagcgaucauacuacacuuccuaUCUGUCAGUAGACUCAAUUUCagacacauua
((((((((((((((((((((((((((((((((((.((............))))))))))))))))))))))))))))))))))))

Structure

                                  c  ucaua 
uaaUGUGUCUGAAAUUGAGUCUAUugacagauag ga     c
|||||||||||||||||||||||||||||||||| ||      
auuacacagaCUUUAACUCAGAUGACUGUCUauc cu     u
                                  -  ucaca 

Annotation confidence Medium

Genome context

chr4: 37152484-37152568 [-]

Mature mtr-miR5262-5p

• Accession: MIMAT0055130
• Description: Medicago truncatula mtr-miR5262-5p mature miRNA
• Sequence: 4 - UGUGUCUGAAAUUGAGUCUAU - 24
• Evidence: experimental ; unknown

Mature mtr-miR5262-3p

• Accession: MIMAT0021262
• Description: Medicago truncatula mtr-miR5262-3p mature miRNA
• Sequence: 55 - UCUGUCAGUAGACUCAAUUUC - 75
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553