miRBase entry: mtr-MIR5741e

Stem-loop mtr-MIR5741e


Accession
MI0019700
Description
Medicago truncatula mtr-MIR5741e precursor miRNA


Sequence

4830 reads, 41.0 reads per million, 111 experiments
uacuuugaauaaacCAUCAAUUUAGUCUCUAAaauaucacucuuucuucaagucccuaaauuauauagaaauaauaguaaucauuaaguauaugaaauucaucaauuuagucuuuaucauaauagcaaggacuaaaauaacagguuuuauauacuuuaaggacuacuuauuauauuuauauguacuuuaaggacuaaauuggagacagugauauuuUAGGGACUAAAUUGAUGGUUUauucuuucau
......(((((((((((((((((((((((((((((((((((...(((((((((((.((((.((((((((.(((((((((.((...((((((((((((((......((((((((((...........))))))))))......))))))))))))))....)).))).)))))).))))))))...)))).)))))....)))))).)))))))))))))))))))))))))))))))))))......

Structure
uacuuu                                   cuu      ----     c    --u        a      -   a  -auu              caucaa          auca 
      gaauaaacCAUCAAUUUAGUCUCUAAaauaucacu   ucuuca    agucc uaaa   uauauaga auaaua gua uc    aaguauaugaaauu      uuuagucuuu    u
      |||||||||||||||||||||||||||||||||||   ||||||    ||||| ||||   |||||||| |||||| ||| ||    ||||||||||||||      ||||||||||    a
      cuuaUUUGGUAGUUAAAUCAGGGAUuuuauaguga   agaggu    ucagg auuu   guauauuu uauuau cau ag    uucauauauuuugg      aaaucaggaa    a
uacuuu                                   --c      uaaa     a    cau        a      u   c  gaau              acaaua          cgau 


Annotation confidence Low
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Genome context
chr8: 23422397-23422643 [-]

Database links

Mature mtr-miR5741e-5p

Accession MIMAT0055264
Description Medicago truncatula mtr-miR5741e-5p mature miRNA
Sequence 15 - CAUCAAUUUAGUCUCUAA - 32
Evidence experimental
unknown

Mature mtr-miR5741e-3p

Accession MIMAT0023155
Description Medicago truncatula mtr-miR5741e-3p mature miRNA
Sequence 217 - UAGGGACUAAAUUGAUGGUUU - 237
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553