Stem-loop gma-MIR4412

Accession

MI0016578

Description

Glycine max gma-MIR4412 precursor miRNA

Literature search

3 open access papers mention gma-MIR4412
(6 sentences)

Sequence

510321 reads, 1571.0 reads per million, 175 experiments

aacUGUUGCGGGUAUCUUUGCCUCUGaaggaaaguugugccuauuauuauggcuuauugcuuuaguGGCGUAGAUCCCCACAACAGUu
((((((((.(((.((((.((((.((((((.(((((((((........)))))))..)).)))))).)))).)))).))).))))))))

Structure

        C   U    U    U      g  --       ccu 
aacUGUUG GGG AUCU UGCC CUGaag aa  aguugug   a
|||||||| ||| |||| |||| |||||| ||  |||||||    
uUGACAAC CCC UAGA GCGG gauuuc uu  ucgguau   u
        A   C    U    u      g  au       uau 

Annotation confidence High

Genome context

chr4: 37037465-37037552 [-]

Mature gma-miR4412-5p

• Accession: MIMAT0020954
• Description: Glycine max gma-miR4412-5p mature miRNA
• Sequence: 4 - UGUUGCGGGUAUCUUUGCCUCUG - 26
• Evidence: experimental ; Illumina [3-4]

Mature gma-miR4412-3p

• Accession: MIMAT0018337
• Description: Glycine max gma-miR4412-3p mature miRNA
• Sequence: 67 - GGCGUAGAUCCCCACAACAGU - 87
• Evidence: experimental ; Illumina [1], 454 [2]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


3. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


4. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553