Stem-loop gma-MIR394a

Accession

MI0016582

Description

Glycine max gma-MIR394a precursor miRNA

Literature search

11 open access papers mention gma-MIR394a
(23 sentences)

Sequence

345269 reads, 9264.0 reads per million, 178 experiments

aucaugaggguuuagcaaaguguugcuaacagaguuuaUUGGCAUUCUGUCCACCUCCacuuccuacucucucucucucucucucuacccaugaauauggAGGUGGGCAUACUGUCAACUGagcucuguuggcuacacuuuguaaagccuucaugau
(((((((((((((.(((((((((.((((((((((((((((((((...((((((((((((.(((.............................)))..))))))))))))...)))))).)))))))))))))).))))))))).)))))))))))))

Structure

             a         u              -      UUC            -c   cuacucucucucu 
aucaugaggguuu gcaaagugu gcuaacagaguuua UUGGCA   UGUCCACCUCCa  uuc             c
||||||||||||| ||||||||| |||||||||||||| ||||||   ||||||||||||  |||             u
uaguacuuccgaa uguuucaca cgguugucucgaGU AACUGU   ACGGGUGGAggu  aag             c
             a         u              C      CAU            au   uacccaucucucu 

Annotation confidence High

Genome context

chr17: 41517111-41517267 [+]

Mature gma-miR394a-5p

• Accession: MIMAT0022974
• Description: Glycine max gma-miR394a-5p mature miRNA
• Sequence: 39 - UUGGCAUUCUGUCCACCUCC - 58
• Evidence: experimental ; Illumina [2]

Mature gma-miR394a-3p

• Accession: MIMAT0018341
• Description: Glycine max gma-miR394a-3p mature miRNA
• Sequence: 101 - AGGUGGGCAUACUGUCAACUG - 121
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553