Stem-loop mtr-MIR168b

Accession

MI0018373

Description

Medicago truncatula mtr-MIR168b precursor miRNA

Literature search

5 open access papers mention mtr-MIR168b
(21 sentences)

Sequence

492633 reads, 3340.0 reads per million, 111 experiments

aaccucugauUCGCUUGGUGCAGGUCGGGAAccauuacauccacaguuucccucgguaaauuggauCCUGCCUUGCAUCAAUCGAAUcggaggcugca
..(((((((((((.((((((((((.(((((.(((......((............)).....))).))))).)))))))))).))))))))))).....

Structure

---aa           C          U     A   uuacau  acagu 
     ccucugauUCG UUGGUGCAGG CGGGA cca      cc     u
     ||||||||||| |||||||||| ||||| |||      ||      
     ggaggcUAAGC AACUACGUUC GUCCu ggu      gg     u
acguc           U          C     a   -uaaau  cuccc 

Annotation confidence High

Genome context

chr5: 41975236-41975333 [+]

Mature mtr-miR168b-5p

• Accession: MIMAT0021270
• Description: Medicago truncatula mtr-miR168b-5p mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAA - 31
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR168b-3p

• Accession: MIMAT0055136
• Description: Medicago truncatula mtr-miR168b-3p mature miRNA
• Sequence: 67 - CCUGCCUUGCAUCAAUCGAAU - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553