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Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage |
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|---|---|
| PubMed ID | 22158467 |
| Authors | "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ" |
| Journal | "Plant Cell |
| Volume | 23 |
| Pages | 4185-4207 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| osa-MIR1861e | MI0008251 | 9 | Chr4 | 6536556 | 6536647 | + | - |
| osa-MIR1861l | MI0008258 | 74 | Chr9 | 13532426 | 13532554 | + | - |
| osa-MIR1861m | MI0008259 | 7 | Chr9 | 13532649 | 13532744 | + | - |
| osa-MIR2871b | MI0013036 | 15 | Chr4 | 8340799 | 8340939 | + | - |
| osa-MIR1863c | MI0013044 | 87 | Chr12 | 4869207 | 4869497 | + | - |
| osa-MIR3979 | MI0017251 | 154 | Chr11 | 19480150 | 19480263 | + | High |
| osa-MIR5143a | MI0018055 | 9 | Chr1 | 8417107 | 8417315 | - | - |
| osa-MIR5147 | MI0018059 | 12 | Chr2 | 17049859 | 17050224 | - | - |
| osa-MIR2863c | MI0018060 | 154 | Chr2 | 29869493 | 29869606 | + | - |
| osa-MIR5150 | MI0018065 | 677 | Chr4 | 18470790 | 18470868 | + | High |
| osa-MIR5152 | MI0018067 | 0 | Chr5 | 28910038 | 28910253 | - | - |
| osa-MIR5159 | MI0018075 | 3 | Chr11 | 11920712 | 11920787 | + | - |
| osa-MIR5485 | MI0019003 | 4 | Chr3 | 22088075 | 22088192 | - | - |
| osa-MIR5488 | MI0019006 | None | Chr12 | 18039131 | 18039343 | + | - |
| osa-MIR5491 | MI0019009 | None | Chr9 | 6896342 | 6896458 | + | - |
| osa-MIR5508 | MI0019026 | 47 | Chr6 | 638203 | 638355 | - | - |
| osa-MIR5513 | MI0019031 | 16 | Chr3 | 34008003 | 34008148 | + | - |
| osa-MIR5516a | MI0019035 | None | Chr5 | 13979418 | 13979512 | - | - |
| osa-MIR5519 | MI0019038 | None | Chr12 | 24358353 | 24358422 | + | - |
| osa-MIR2275d | MI0019043 | 0 | Chr8 | 3736806 | 3736932 | - | - |
| osa-MIR5788 | MI0019798 | 367 | Chr3 | 30006944 | 30007059 | + | - |
| osa-MIR812p | MI0019799 | 249 | Chr8 | 25425998 | 25426211 | + | Low |
| osa-MIR812q | MI0019800 | 862 | Chr10 | 18223398 | 18223639 | + | Low |
| osa-MIR5789 | MI0019801 | None | Chr6 | 1801934 | 1801998 | - | - |
| osa-MIR5790 | MI0019802 | 0 | Chr11 | 7740052 | 7740134 | - | - |
| osa-MIR5791 | MI0019803 | None | Chr12 | 24374418 | 24374566 | + | - |
| osa-MIR5792 | MI0019804 | None | Chr10 | 11842884 | 11842960 | + | - |
| osa-MIR5793 | MI0019805 | None | Chr11 | 24288999 | 24289076 | + | - |
| osa-MIR5794 | MI0019806 | 6459 | None | None | - | ||
| osa-MIR812r | MI0019807 | 633 | Chr11 | 18809746 | 18809963 | + | Low |
| osa-MIR5795 | MI0019808 | 0 | Chr9 | 11103759 | 11103977 | - | - |
| osa-MIR5796 | MI0019809 | 0 | Chr8 | 2672521 | 2672691 | - | - |
| osa-MIR5797 | MI0019810 | None | Chr8 | 17084767 | 17084832 | + | - |
| osa-MIR5798 | MI0019811 | 0 | Chr7 | 6672120 | 6672276 | - | - |
| osa-MIR812s | MI0019812 | 146 | Chr3 | 6033231 | 6033401 | - | - |
| osa-MIR5799 | MI0019813 | 17 | Chr6 | 10732163 | 10732286 | + | - |
| osa-MIR5800 | MI0019814 | None | Chr11 | 24921149 | 24921241 | - | - |
| osa-MIR5801a | MI0019815 | 96 | Chr12 | 19318211 | 19318289 | - | - |
| osa-MIR5802 | MI0019816 | 46 | Chr1 | 13088727 | 13088790 | + | - |
| osa-MIR812t | MI0019817 | 337 | Chr6 | 17370227 | 17370448 | - | - |
| osa-MIR812u | MI0019818 | 247 | Chr11 | 8663581 | 8663797 | - | - |
| osa-MIR5803 | MI0019819 | 4 | Chr4 | 30231534 | 30231620 | + | - |
| osa-MIR5804 | MI0019820 | 0 | Chr4 | 20810160 | 20810286 | - | - |
| osa-MIR5805 | MI0019821 | 23 | Chr12 | 13821490 | 13821896 | - | - |
| osa-MIR5806 | MI0019822 | None | Chr6 | 24708626 | 24708706 | + | - |
| osa-MIR812v | MI0019823 | 90 | Chr5 | 18432835 | 18433066 | - | - |
| osa-MIR5807 | MI0019824 | 8 | Chr8 | 3597497 | 3597849 | - | - |
| osa-MIR5801b | MI0019825 | 43 | Chr9 | 18739255 | 18739333 | + | - |
| osa-MIR5809 | MI0019826 | 10 | Chr4 | 23527607 | 23527669 | - | - |
| osa-MIR5810 | MI0019827 | 0 | Chr12 | 7333292 | 7333419 | - | - |
| osa-MIR5811 | MI0019828 | 7 | Chr3 | 13197994 | 13198070 | - | - |
| osa-MIR5812 | MI0019829 | 0 | Chr1 | 11846139 | 11846200 | - | - |
| osa-MIR5813 | MI0019830 | 20 | Chr4 | 9952990 | 9953124 | - | - |
| osa-MIR5814 | MI0019831 | 21 | Chr6 | 26661349 | 26661456 | - | - |
| osa-MIR5815 | MI0019832 | 12 | Chr1 | 25017304 | 25017415 | - | - |
| osa-MIR5816 | MI0019833 | 17 | Chr9 | 11583948 | 11584087 | - | - |
| osa-MIR5143b | MI0019834 | 9 | Chr1 | 8415808 | 8415998 | - | - |
| osa-MIR5817 | MI0019835 | 11 | Chr1 | 5990125 | 5990276 | + | - |
| osa-MIR5818 | MI0019836 | None | Chr4 | 13157348 | 13157406 | + | - |
| osa-MIR5819 | MI0019837 | None | Chr1 | 29695842 | 29695904 | + | - |
| osa-MIR5820 | MI0019838 | None | Chr10 | 13982605 | 13982688 | + | - |
| osa-MIR5821 | MI0019839 | 5 | Chr12 | 24605427 | 24605673 | + | - |
| osa-MIR5822 | MI0019840 | None | Chr11 | 26335769 | 26335976 | + | - |
| osa-MIR5823 | MI0019841 | 1 | Chr11 | 21506677 | 21506783 | - | - |
| osa-MIR5824 | MI0019842 | 30 | Chr1 | 1761530 | 1761730 | - | - |
| osa-MIR1319b | MI0019843 | 28 | Chr3 | 23399893 | 23400011 | + | - |
| osa-MIR5825 | MI0019844 | 12 | Chr5 | 23591556 | 23591787 | - | - |
| osa-MIR5826 | MI0019845 | 7 | Chr11 | 12858909 | 12859240 | + | - |
| osa-MIR5827 | MI0019846 | 0 | Chr4 | 30081902 | 30082077 | - | - |
| osa-MIR5828 | MI0019847 | 5 | Chr6 | 16015691 | 16015801 | + | - |
| osa-MIR5829 | MI0019848 | None | Chr6 | 20149367 | 20149561 | + | - |
| osa-MIR5830 | MI0019849 | 0 | Chr1 | 4352437 | 4352631 | - | - |
| osa-MIR5831 | MI0019850 | 1 | Chr5 | 28577824 | 28577979 | + | - |
| osa-MIR5179 | MI0019851 | None | Chr2 | 12450910 | 12451133 | + | - |
| osa-MIR5832 | MI0019852 | 0 | Chr12 | 21168996 | 21169086 | + | - |
| osa-MIR5833 | MI0019853 | 0 | Chr5 | 9341240 | 9341299 | - | - |
| osa-MIR5834 | MI0019854 | 0 | Chr6 | 4758584 | 4758701 | - | - |
| osa-MIR5835 | MI0019855 | 3 | Chr6 | 19306710 | 19306970 | - | - |
| osa-MIR2873c | MI0019856 | 4 | Chr7 | 27503433 | 27503554 | + | - |
| osa-MIR5836 | MI0019857 | None | Chr6 | 17701867 | 17701955 | - | - |
| osa-MIR5837 | MI0019858 | None | Chr11 | 24702021 | 24702212 | - | - |
| osa-MIR5516b | MI0019859 | None | Chr5 | 13962666 | 13962734 | - | - |
| osa-MIR818f | MI0023432 | 94 | Chr8 | 18746588 | 18746866 | - | - |