Stem-loop osa-MIR5807

Accession

MI0019824

Description

Oryza sativa osa-MIR5807 precursor miRNA

Literature search

1 open access papers mention osa-MIR5807
(1 sentences)

Sequence

45855 reads, 136.0 reads per million, 137 experiments

aucugaaaguAGGAGGUCUGGAGAGUUAUGUGGCaggaagccaagccaggaaauguaauguaaucgacagcucuaacugaaacaucccuuauaaguuauuuuuagggaacaaacccuuauaaguaaucacacuucauaaugaggcacauuacuccucuaacugaaacaucccuuauaaguuauuuuuagggaacaaacccuuauaaguaaucacacuucauaaugaggcacauuacucaucuauaaaaucaauguggauagauugaucaucaugaccuacaugugagcugucgauuagauuagauuuccUGGCUUCCUGUCACAUAACUCUCCacgccuccuauuuucagauu
(((((((((((((((((.((((((((((((((((((((.....(((((((((((.((((.((((((((((((((((((...............))))).....((((......))))....((((((....((((((.((((((...((((((....(((((...............))))).....((((......))))....))))))....)))))).))))))...))))))..........((((((........))))))...((((.....)))).))))))))))))).)))).))))))))))))))))))))))))))))))).))))))))))))))))).

Structure

-                 C                    agcca           g    g             uaacugaaacaucccuuauaaguuauuuuuagggaacaaacccuuaua      caca      a      -cac      ccucuaacugaaacaucccuuauaa 
 aucugaaaguAGGAGGU UGGAGAGUUAUGUGGCagga     agccaggaaau uaau uaaucgacagcuc                                                aguaau    cuucau augagg    auuacu                         g
 ||||||||||||||||| ||||||||||||||||||||     ||||||||||| |||| |||||||||||||                                                ||||||    |||||| ||||||    ||||||                          
 uagacuuuuauccuccg aCCUCUCAAUACACUGUCCU     UCGGUccuuua auua auuagcugucgag                                                ucauua    ggagua uacuuc    uaauga                         u
u                 c                    -----           g    g             -uguacauccaguacuacuaguuagauagguguaacuaaaauaucuac      -cac      a      acac      auauucccaaacaagggauuuuuau 

Annotation confidence Low

Genome context

8: 3597497-3597849 [-]

Mature osa-miR5807-5p

• Accession: MIMAT0023279
• Description: Oryza sativa osa-miR5807-5p mature miRNA
• Sequence: 11 - AGGAGGUCUGGAGAGUUAUGUGGC - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR5807-3p

• Accession: MIMAT0056282
• Description: Oryza sativa osa-miR5807-3p mature miRNA
• Sequence: 310 - UGGCUUCCUGUCACAUAACUCUCC - 333
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207