Stem-loop osa-MIR5809

Accession

MI0019826

Description

Oryza sativa osa-MIR5809 precursor miRNA

Literature search

2 open access papers mention osa-MIR5809
(2 sentences)

Sequence

7713 reads, 38.0 reads per million, 139 experiments

guaaacgcugguagcAGCGGCGACGAGAAUAGAUGGCgUCGUCGCCGGCGACCACAGCacaac
......((((....(..(((((((((............)))))))))..)....)))).....

Structure

guaaac    guag AG         GAAUA 
      gcug    c  CGGCGACGA     G
      ||||    |  |||||||||      
      CGAC    G  GCCGCUGCU     A
-caaca    ACCA CG         gCGGU 

Annotation confidence Medium

Genome context

4: 23527607-23527669 [-]

Mature osa-miR5809-5p

• Accession: MIMAT0056284
• Description: Oryza sativa osa-miR5809-5p mature miRNA
• Sequence: 16 - AGCGGCGACGAGAAUAGAUGGC - 37
• Evidence: experimental ; unknown

Mature osa-miR5809-3p

• Accession: MIMAT0023281
• Description: Oryza sativa osa-miR5809-3p mature miRNA
• Sequence: 39 - UCGUCGCCGGCGACCACAGC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207