Stem-loop osa-MIR5795

Accession

MI0019808

Description

Oryza sativa osa-MIR5795 precursor miRNA

Literature search

2 open access papers mention osa-MIR5795
(2 sentences)

Sequence

14903 reads, 55.0 reads per million, 115 experiments

ugguauacugAUGUCGAGGUCGAGUUCCCGGCugcuccggcccuauugaguauggaugcuaugguuucgucgacgaggcgaacguagguaggagauagagguauaucaaaccauaagagaauguguguagaugcaauuuuguguuuaaaaaguacuuucuccccguacaacagugacauaggacaugucgcAGCAAGGCGAACCGAUGUCGACGACcac
((((.......((((((.((((.((((((.((((((((.....(((((.((((((...(((((..((((((.....)))))))))))...(((((...((((((.......(((((((...(((((....))))).)))))))........)))))))))))))))))..))))).....)))......)))))..)).)))))))).)))))))))).

Structure

-    auacugA      G    A    -  -G     ------   ggccc     -a      augcuaugguuucgucgacgaggcgaacguaggua     uag      -aucaaac       gaa     g 
 uggu       UGUCGA GUCG GUUC CC  GCugc      ucc     uauug  guaugg                                   ggaga   agguau        cauaaga   ugugu u
 ||||       |||||| |||| |||| ||  |||||      |||     |||||  ||||||                                   |||||   ||||||        |||||||   |||||  
 acCA       GCAGCU UAGC CAAG GG  CGAcg      agg     gugac  caugcc                                   ccucu   uucaug        guguuuu   acgua a
c    -------      G    -    C  AA     cuguac   auaca     aa      -----------------------------------     ---      aaaaauuu       --a     g 

Annotation confidence Medium

Genome context

9: 11103759-11103977 [-]

Mature osa-miR5795-5p

• Accession: MIMAT0023263
• Description: Oryza sativa osa-miR5795-5p mature miRNA
• Sequence: 11 - AUGUCGAGGUCGAGUUCCCGGC - 32
• Evidence: experimental ; Illumina [1]

Mature osa-miR5795-3p

• Accession: MIMAT0056268
• Description: Oryza sativa osa-miR5795-3p mature miRNA
• Sequence: 192 - AGCAAGGCGAACCGAUGUCGACGAC - 216
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207