Stem-loop osa-MIR5143b

Accession

MI0019834

Description

Oryza sativa osa-MIR5143b precursor miRNA

Literature search

2 open access papers mention osa-MIR5143b
(2 sentences)

Sequence

49674 reads, 257.0 reads per million, 142 experiments

ugacucaUGCUUCCAUGUUGACCAACAUACCaccaaaauauuaugauguucgcauguugcccuguuuaccacuauuaaucaagacacucccccuccucucuuuuguuuuccuggugaacaucaauauauugguaaacaggcuaagguuguaauuuucUGUGGUAUGUUGGCAAUGUAGGAAgucugaaugg
....(((.((((((((((((.((((((((((((..(((.((((((((.((.((.(((((((.(((((((((.........((((..............)))).........)))))))))..........))).)))).)).)).)))))))))))..)))))))))))))))))).)))))).)))....

Structure

ugac   U      -      A            ca   u        g  c  a    -   ---------c         cuauuaauc    cacucc 
    uca GCUUCC AUGUUG CCAACAUACCac  aaa auuaugau uu gc uguu gcc          uguuuacca         aaga      c
    ||| |||||| |||||| ||||||||||||  ||| |||||||| || || |||| |||          |||||||||         ||||       
    agu ugAAGG UGUAAC GGUUGUAUGGUG  uuu uaauguug aa cg acaa ugg          acaaguggu         uucu      c
ggua   c      A      -            Uc   -        g  u  g    a   uuauauaacu         ccuuuuguu    cuccuc 

Annotation confidence Low

Genome context

1: 8415808-8415998 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5143b

Mature osa-miR5143b-5p

• Accession: MIMAT0056290
• Description: Oryza sativa osa-miR5143b-5p mature miRNA
• Sequence: 8 - UGCUUCCAUGUUGACCAACAUACC - 31
• Evidence: experimental ; unknown

Mature osa-miR5143b-3p

• Accession: MIMAT0023289
• Description: Oryza sativa osa-miR5143b-3p mature miRNA
• Sequence: 158 - UGUGGUAUGUUGGCAAUGUAGGAA - 181
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207