Stem-loop osa-MIR5798

Accession

MI0019811

Description

Oryza sativa osa-MIR5798 precursor miRNA

Sequence

2947 reads, 33.0 reads per million, 35 experiments

uugagaggcaguccgugcuauguggcggucauagggagcgcaUUUGGCAAGCUUGAGCGUUGUgguggcaguacucucuaaguaauuuccauugcaguguucuuacgaaaguugcuaggcacccugCUGGACUACAAGAUCCCGGAUuccaucuccc
..((((((.((((((..((.(((((...((((((((.((....(((((((.(((((((((((((((((...((((.....))))....))))))))))))))......)))))))))))).))))).))).)))))))....)))))))).))))..

Structure

uu    -  c      --ug  a     cgg   -     a  gcaU       G   ------              -cag    c 
  gaga gg aguccg    cu ugugg   uca uaggg gc    UUGGCAA CUU      GAGCGUUGUggugg    uacu u
  |||| || ||||||    || |||||   ||| ||||| ||    ||||||| |||      ||||||||||||||    |||| c
  cucu cc uUAGGC    GA ACAUC   GGU guccc cg    gaucguu gaa      cuugugacguuacc    auga u
cc    a  -      CCUA  -     --A   C     a  ----       -   agcauu              uuua    a 

Annotation confidence Low

Genome context

7: 6672120-6672276 [-]

Mature osa-miR5798-5p

• Accession: MIMAT0056270
• Description: Oryza sativa osa-miR5798-5p mature miRNA
• Sequence: 43 - UUUGGCAAGCUUGAGCGUUGU - 63
• Evidence: experimental ; unknown

Mature osa-miR5798-3p

• Accession: MIMAT0023266
• Description: Oryza sativa osa-miR5798-3p mature miRNA
• Sequence: 127 - CUGGACUACAAGAUCCCGGAU - 147
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207