Stem-loop osa-MIR812v

Accession

MI0019823

Description

Oryza sativa osa-MIR812v precursor miRNA

Literature search

9 open access papers mention osa-MIR812v
(15 sentences)

Sequence

51818 reads, 176.0 reads per million, 142 experiments

acugcauccuccguuccaauuuuagugaaaccauaaguuuccgugcuuaauuuuaacuguuuauuuuauuuaaauuuuuuuuauaauuaguAUUUUUGUUGUUAUGAGAUGAUAAaacauaaguauuacuuuaugcgugacuuauguuuuuauuuuuuuucaaauaaaaaggacgauuaaaguuagauauaaaaacucAUGGCUGCACUUAAAAUGGGACGGagagaguacu
..(((.((((((((((((.(((.((((...((((.(((((..(((.((((((((((.(((((.((((((((.......(((((((((.............)))))))))....(((((((((((..(((.......))))))))))))))...........)))))))).))))).)))))))))).)))..))))).))))...)))).))).)))))))))).)))))..

Structure

ac   a  -          a   u    aaa    a     cc   c          c     a        ---------------------------------------------aaauuuu         uaguA 
  ugc uc cuccguucca uuu agug   ccau aguuu  gug uuaauuuuaa uguuu uuuuauuu                                                    uuuuauaau     U
  ||| || |||||||||| ||| ||||   |||| |||||  ||| |||||||||| ||||| ||||||||                                                    |||||||||     U
  aug ag gaGGCAGGGU AAA UCAC   GGUA ucaaa  uau gauugaaauu gcagg aaaauaaa                                                    AGAGUAUUG     U
uc   -  a          A   U    GUC    c     aa   a          a     a        cuuuuuuuuauuuuuguauucagugcguauuucauuaugaauacaaAAUAGU         UUGUU 

Annotation confidence Low

Genome context

5: 18432835-18433066 [-]

Mature osa-miR812v-5p

• Accession: MIMAT0056281
• Description: Oryza sativa osa-miR812v-5p mature miRNA
• Sequence: 92 - AUUUUUGUUGUUAUGAGAUGAUAA - 115
• Evidence: experimental ; unknown

Mature osa-miR812v-3p

• Accession: MIMAT0023278
• Description: Oryza sativa osa-miR812v-3p mature miRNA
• Sequence: 199 - AUGGCUGCACUUAAAAUGGGACGG - 222
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207