Stem-loop osa-MIR5833

Accession

MI0019853

Description

Oryza sativa osa-MIR5833 precursor miRNA

Literature search

1 open access papers mention osa-MIR5833
(1 sentences)

Sequence

561 reads, 4.0 reads per million, 76 experiments

uccucuaucUCCUCCUCGGGCUCAUCGGGCucagCCUCAAAGCCCGGUGGGGAGGGAgga
((((((..((((((.(((((((....((((...))))...))))))).))))))))))))

Structure

      au      C       CAUC    u 
uccucu  cUCCUC UCGGGCU    GGGC  
||||||  |||||| |||||||    |||| c
aggAGG  GAGGGG GGCCCGA    UCCg  
      --      U       -AAC    a 

Annotation confidence Medium

Genome context

5: 9341240-9341299 [-]

Mature osa-miR5833-5p

• Accession: MIMAT0023308
• Description: Oryza sativa osa-miR5833-5p mature miRNA
• Sequence: 10 - UCCUCCUCGGGCUCAUCGGGC - 30
• Evidence: experimental ; Illumina [1]

Mature osa-miR5833-3p

• Accession: MIMAT0056306
• Description: Oryza sativa osa-miR5833-3p mature miRNA
• Sequence: 35 - CCUCAAAGCCCGGUGGGGAGGGA - 57
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207