Stem-loop osa-MIR5799

Accession

MI0019813

Description

Oryza sativa osa-MIR5799 precursor miRNA

Literature search

2 open access papers mention osa-MIR5799
(7 sentences)

Sequence

7383 reads, 28.0 reads per million, 138 experiments

uuuuugaaauAAGACGAAUAAUCAAACGUUGGACauaaacaguguaaaauuguugucuuucuaggacggggguaguauuuaucaauuuuagauuuaacguuuaacuAUUUAUCACUUUUAGAUU
..(((((((...((.(((((...((((((((((..((((....((((((((.(((((((...))))))).)))....)))))....))))..))))))))))...))))).))..)))))))..

Structure

uu       uAA  C     AUC          Ca    cagu     ----   g       u 
  uuugaaa   GA GAAUA   AAACGUUGGA  uaaa    guaaa    auu uugucuu  
  |||||||   || |||||   ||||||||||  ||||    |||||    ||| ||||||| c
  AGAUUUU   CU UUUAu   uuugcaauuu  auuu    uauuu    ugg ggcagga  
UU       -CA  A     caa          ag    uaac     auga   g       u 

Annotation confidence Low

Genome context

6: 10732163-10732286 [+]

Mature osa-miR5799-5p

• Accession: MIMAT0023268
• Description: Oryza sativa osa-miR5799-5p mature miRNA
• Sequence: 11 - AAGACGAAUAAUCAAACGUUGGAC - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR5799-3p

• Accession: MIMAT0056272
• Description: Oryza sativa osa-miR5799-3p mature miRNA
• Sequence: 107 - AUUUAUCACUUUUAGAUU - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207