Stem-loop osa-MIR5831

Accession

MI0019850

Description

Oryza sativa osa-MIR5831 precursor miRNA

Sequence

3040 reads, 16.0 reads per million, 126 experiments

uUUGGUCAAAUUUAAACUACUCUaaguuuaacuaauuuuauaaaaagauaguaauauuuuaaauaaauuuucauaauauauuuauuuuggguuaaaaauauuacuacuuuuuucuauaaaauUAGUCAAACUUAGAAUAGUUGGACuuuaacuaaa
.(((((.(((.((.(((((.(((((((((.((((((((((((((((((((((((((((((.(((......(((.((((....)))).)))))).)))))))))))).)))))).)))))))))))).))))))))).))))).)).))).))))).

Structure

u     C   U  A     C         a            -      -            a   aaauuu   u    u 
 UUGGU AAA UU AACUA UCUaaguuu acuaauuuuaua aaaaga uaguaauauuuu aau      uca aaua a
 ||||| ||| || ||||| ||||||||| |||||||||||| |||||| |||||||||||| |||      ||| ||||  
 aauca uuu AG UUGAU AGAUUCAAA UGAUuaaaauau uuuuuu aucauuauaaaa uug      ggu uuau u
a     a   C  G     A         C            c      c            a   ------   u    u 

Annotation confidence Low

Genome context

5: 28577824-28577979 [+]

Mature osa-miR5831-5p

• Accession: MIMAT0056304
• Description: Oryza sativa osa-miR5831-5p mature miRNA
• Sequence: 2 - UUGGUCAAAUUUAAACUACUCU - 23
• Evidence: experimental ; unknown

Mature osa-miR5831-3p

• Accession: MIMAT0023305
• Description: Oryza sativa osa-miR5831-3p mature miRNA
• Sequence: 123 - UAGUCAAACUUAGAAUAGUUGGAC - 146
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207