Stem-loop osa-MIR5788

Accession

MI0019798

Description

Oryza sativa osa-MIR5788 precursor miRNA

Literature search

6 open access papers mention osa-MIR5788
(11 sentences)

Sequence

310639 reads, 1280.0 reads per million, 142 experiments

aaaaaaacgauucuagaacUGGAUGUGACAUACUCUAGUAcaaugaaucuggauagagguauauccAGAUUCGUAGUACUAGGAuaugucacauccaguacuagauugauuuuuuu
(((((((((((.((((.(((((((((((((((.((((((((.(((((((((((((......))))))))))))).)))))))).))))))))))))))).)))))))).)))))))

Structure

       -    u    a               C        a             ga 
aaaaaaa cgau cuag acUGGAUGUGACAUA UCUAGUAc augaaucuggaua  g
||||||| |||| |||| ||||||||||||||| |||||||| |||||||||||||   
uuuuuuu guua gauc ugaccuacacuguau GGAUCAUG UGCUUAGAccuau  g
       a    -    a               A        A             au 

Annotation confidence Low

Genome context

3: 30006944-30007059 [+]

Mature osa-miR5788-5p

• Accession: MIMAT0023253
• Description: Oryza sativa osa-miR5788-5p mature miRNA
• Sequence: 20 - UGGAUGUGACAUACUCUAGUA - 40
• Evidence: experimental ; Illumina [1]

Mature osa-miR5788-3p

• Accession: MIMAT0056258
• Description: Oryza sativa osa-miR5788-3p mature miRNA
• Sequence: 67 - AGAUUCGUAGUACUAGGA - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207