Stem-loop osa-MIR5791

Accession

MI0019803

Description

Oryza sativa osa-MIR5791 precursor miRNA

Literature search

3 open access papers mention osa-MIR5791
(4 sentences)

Sequence

9810 reads, 68.0 reads per million, 53 experiments

ugcugguucaGAUGGAAGAGUAAAAUUAGAUCUAgugcauugcuauguuaggccuaggaggcaccaggaacuuccuuguuuggugcaccaggagcugaagcaUUGCAGGAGACUAGAGACCAGcauuuuggucuuucaaaucaucagca
(((((((.....(((((((.((((((....((((((...((((.(((((.(((((.((..((((((..(((......))))))))).)).)).)))..))))).))))...)))))).......)))))).)))))))....)))))))

Structure

       ucaGA       G      ---UAGA      gca    u     -a   -  a  ag      gg   uu 
ugcuggu     UGGAAGA UAAAAU       UCUAgu   uugc auguu  ggc cu gg  gcacca  aac  c
|||||||     ||||||| ||||||       ||||||   |||| |||||  ||| || ||  ||||||  |||   
acgacua     acuuucu guuuua       AGAUCA   GACG Uacga  ucg gg cc  cguggu  uug  c
       -cuaa       g      cGACCAG      GAG    U     ag   a  a  -a      --   uu 

Annotation confidence Not enough data

Genome context

12: 24374418-24374566 [+]

Mature osa-miR5791-5p

• Accession: MIMAT0056263
• Description: Oryza sativa osa-miR5791-5p mature miRNA
• Sequence: 11 - GAUGGAAGAGUAAAAUUAGAUCUA - 34
• Evidence: experimental ; unknown

Mature osa-miR5791-3p

• Accession: MIMAT0023258
• Description: Oryza sativa osa-miR5791-3p mature miRNA
• Sequence: 103 - UUGCAGGAGACUAGAGACCAG - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207