Stem-loop osa-MIR5823

Accession

MI0019841

Description

Oryza sativa osa-MIR5823 precursor miRNA

Sequence

2766 reads, 12.0 reads per million, 101 experiments

uguuugaauuggUGGGGCUUAGGCUUAAUGCCUUUGgaugggcuauaaauggaauuaaaguucccacuaucugAAGGAAUUGGGUCUAAUCUCUUCCuauccaaaca
((((((.((.((.((((.(((((((((((.(((((((((((.........(((((....)))))..))))))))))).))))))))))).)))).)).)).))))))

Structure

      a  u  U    C           G           gcuauaaau     u 
uguuug au gg GGGG UUAGGCUUAAU CCUUUGgaugg         ggaau a
|||||| || || |||| ||||||||||| |||||||||||         |||||  
acaaac ua CC UCUC AAUCUGGGUUA GGAAgucuauc         ccuug a
      c  u  U    U           A           -------ac     a 

Annotation confidence High

Genome context

11: 21506677-21506783 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5823

Mature osa-miR5823-5p

• Accession: MIMAT0056295
• Description: Oryza sativa osa-miR5823-5p mature miRNA
• Sequence: 13 - UGGGGCUUAGGCUUAAUGCCUUUG - 36
• Evidence: experimental ; unknown

Mature osa-miR5823-3p

• Accession: MIMAT0023296
• Description: Oryza sativa osa-miR5823-3p mature miRNA
• Sequence: 74 - AAGGAAUUGGGUCUAAUCUCUUCC - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207