Stem-loop osa-MIR5832

Accession

MI0019852

Description

Oryza sativa osa-MIR5832 precursor miRNA

Sequence

398 reads, 7.0 reads per million, 30 experiments

caucaggaguugucaugccaCAUAUCCGUCCUCACCCUGACcauuaguggagaggugcgcauUUGGCGGAGCGGUUGCUGUCAgcacugag
..((((..((((.((.((.((...(((((((.((((((..(((....))))).)))).).....))))))...)).)))).)))).)))).

Structure

ca    ga    u  u  c  AUA      ----- U    -  GA   u 
  ucag  guug ca gc aC   UCCGUC     C CACC CU  Cca u
  ||||  |||| || || ||   ||||||     | |||| ||  |||  
  aguc  cgAC GU CG UG   AGGCGG     g gugg ga  ggu a
-g    -a    U  -  U  GCG      UUuac c    a  --   g 

Annotation confidence Low

Genome context

12: 21168996-21169086 [+]

Mature osa-miR5832-5p

• Accession: MIMAT0056305
• Description: Oryza sativa osa-miR5832-5p mature miRNA
• Sequence: 21 - CAUAUCCGUCCUCACCCUGAC - 41
• Evidence: experimental ; unknown

Mature osa-miR5832-3p

• Accession: MIMAT0023307
• Description: Oryza sativa osa-miR5832-3p mature miRNA
• Sequence: 63 - UUGGCGGAGCGGUUGCUGUCA - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207