Stem-loop osa-MIR5794

Accession

MI0019806

Description

Oryza sativa osa-MIR5794 precursor miRNA

Literature search

3 open access papers mention osa-MIR5794
(3 sentences)

Sequence

1227564 reads, 4277.0 reads per million, 142 experiments

caucgauauggcugcaagacuguuugcgauuccccaugaaauccaaauauggaaaucaaaaggcuugaaguagauacuguuggcauacacacaaccauagaguucaucuucagaaccaaauccacguucuugaaaauaugaggagggugcugcuggaagaacaacaaucgcucaucgugauggcugcccaccaugguGACCGUAGAAACUAGCAUAGAAAAaaguagauaucucaagugacuuuguucauuuacguugggauagacaaguaacuaccuuuucuauuuuaguuucuauggucacuuugguggcagccaugauagacagaaacaaaggcucaccgaugaaacccaggacuugcucuacuucaagcuuauuguuuucuauauucuggauuuccUGAGGAAUCACUAGUAGUCGUucagcgauauccaug
(((.(((((.((((...(((((((.(.((((((.((.((((((((((((((((((.(((.((((((((((((((....((((.........))))......((((.(((.(((.(((...(((.(((..........))).))).))).)))..))).)))).........(((((((((((((((((.((((.((((((((((((((((((.((((((((..((((.((((((((((((..........)))).)))))))).........)))).)))))))).)))))))))))))))))).))))))))))))....................))).))))))..............)))))))))))))).))).)))))))))).)))))))).)).)))))).).)))))))...)))).))))).)))

Structure

   c     g    caa       u c      c  u        -          u   a              uacuguuggcauacacacaaccauagaguucaucuucagaaccaaauccacguucuugaaaauaugaggagggugcugcuggaagaacaacaaucgc      -   --------------------        c    u                  C        aa    --------a        -    cuuu 
cau gauau gcug   gacuguu g gauucc ca gaaaucca aauauggaaa caa aggcuugaaguaga                                                                                                 ucaucg uga                    uggcugcc acca gguGACCGUAGAAACUAG AUAGAAAA  guag         uaucucaa guga    g
||| ||||| ||||   ||||||| | |||||| || |||||||| |||||||||| ||| ||||||||||||||                                                                                                 |||||| |||                    |||||||| |||| |||||||||||||||||| ||||||||  ||||         |||||||| ||||     
gua cuaua cgac   CUGAUGA C CUAAGG GU cuuuaggu uuauaucuuu guu uucgaacuucaucu                                                                                                 aguagc acu                    accgacgg uggu ucacugguaucuuugauu uaucuuuu  cauc         auaggguu cauu    u
   c     g    uUG       U A      A  c        c          u   a              -----------------------------------------------------------------------------------cguucaggacccaa      c   cggaaacaaagacagauagu        -    u                  u        -c    aaugaacag        g    uacu 

Annotation confidence Low

Genome context

5: 3876822-3877257 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5794

Mature osa-miR5794-5p

• Accession: MIMAT0056266
• Description: Oryza sativa osa-miR5794-5p mature miRNA
• Sequence: 198 - GACCGUAGAAACUAGCAUAGAAAA - 221
• Evidence: experimental ; unknown

Mature osa-miR5794-3p

• Accession: MIMAT0023261
• Description: Oryza sativa osa-miR5794-3p mature miRNA
• Sequence: 401 - UGAGGAAUCACUAGUAGUCGU - 421
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207