Stem-loop osa-MIR5816

Accession

MI0019833

Description

Oryza sativa osa-MIR5816 precursor miRNA

Sequence

18015 reads, 54.0 reads per million, 138 experiments

ucUAGGAGUGUUUGUAGGAGCGCCACgugaaaauguaggagcguauauaggaaguuuaauagacuuuuaguauauaauagauuucuaggauuucucuaauuuAUUUGAGAGUCACGUAGCguuguaaaagcauuuguaga
((((.((((((((...(.(((((.((((((...(.(((((((((((((.((((((((...)))))))).))))))....).)))))).)..(((((..........))))))))))).))))).)..)))))))).))))

Structure

    G        GUA G     C      aaauguaggagcguauauaggaaguuuaauagacuuuuaguauauaauagauuucuaggau     uaau 
ucUA GAGUGUUU   G AGCGC ACguga                                                             uucuc    u
|||| ||||||||   | ||||| ||||||                                                             |||||     
agau uuuacgaa   u uugCG UGCACU                                                             GAGAG    u
    g        -aa g     A      -------------------------------------------------------------     UUUA 

Annotation confidence Low

Genome context

9: 11583948-11584087 [-]

Mature osa-miR5816-5p

• Accession: MIMAT0023288
• Description: Oryza sativa osa-miR5816-5p mature miRNA
• Sequence: 3 - UAGGAGUGUUUGUAGGAGCGCCAC - 26
• Evidence: experimental ; Illumina [1]

Mature osa-miR5816-3p

• Accession: MIMAT0056289
• Description: Oryza sativa osa-miR5816-3p mature miRNA
• Sequence: 103 - AUUUGAGAGUCACGUAGC - 120
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207