Stem-loop osa-MIR5834

Accession

MI0019854

Description

Oryza sativa osa-MIR5834 precursor miRNA

Literature search

1 open access papers mention osa-MIR5834
(1 sentences)

Sequence

641 reads, 12.0 reads per million, 27 experiments

uaacuugcacACGGAUGUAGAAAUUGGUGAUuuuacagaggcguuagcucaagaauuauaguaugcauucgacacucugaauaUGAUCUGAAUUUUGUUACAUCccugaaacaagaaa
...((((..((.(((((((((((((.(.((((.((((((((((...((................))...)).).)))))..)).))))).))))))..))))))).))...))))...

Structure

uaa    -ca  C       --      G U    u  --     - -  uua  ucaagaa 
   cuug   cA GGAUGUA  GAAAUU G GAUu ua  cagag g cg   gc       u
   ||||   || |||||||  |||||| | |||| ||  ||||| | ||   ||        
   gaac   gu cCUACAU  UUUUAA U CUAG au  gucuc c gc   cg       u
aaa    aaa  c       UG      G -    U  aa     a a  uua  uaugaua 

Annotation confidence Medium

Genome context

6: 4758584-4758701 [-]

Mature osa-miR5834-5p

• Accession: MIMAT0023309
• Description: Oryza sativa osa-miR5834-5p mature miRNA
• Sequence: 11 - ACGGAUGUAGAAAUUGGUGAU - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5834-3p

• Accession: MIMAT0056307
• Description: Oryza sativa osa-miR5834-3p mature miRNA
• Sequence: 84 - UGAUCUGAAUUUUGUUACAUC - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207