Stem-loop osa-MIR5820

Accession

MI0019838

Description

Oryza sativa osa-MIR5820 precursor miRNA

Sequence

440 reads, 9.0 reads per million, 33 experiments

ggaaauugaacUUAAAUCCUUAAUCGUUUGCUagauuuuucuugugagugaccUGGCAGAGAUUGAUCGAGGAAuuguauuucc
((((((...((.....(((((.((((((((((((.((.(((....))).)).))))))))...)))).)))))...))))))))

Structure

      uga  UUAAA     A    ---        a  u   u 
ggaaau   ac     UCCUU AUCG   UUUGCUag uu uuc u
||||||   ||     ||||| ||||   |||||||| || |||  
ccuuua   ug     AGGAG UAGU   AGACGGUc ag gag g
      ---  --uuA     C    UAG        c  u   u 

Annotation confidence Medium

Genome context

10: 13982605-13982688 [+]

Mature osa-miR5820-5p

• Accession: MIMAT0056292
• Description: Oryza sativa osa-miR5820-5p mature miRNA
• Sequence: 12 - UUAAAUCCUUAAUCGUUUGCU - 32
• Evidence: experimental ; unknown

Mature osa-miR5820-3p

• Accession: MIMAT0023293
• Description: Oryza sativa osa-miR5820-3p mature miRNA
• Sequence: 54 - UGGCAGAGAUUGAUCGAGGAA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207