Stem-loop osa-MIR812s

Accession

MI0019812

Description

Oryza sativa osa-MIR812s precursor miRNA

Literature search

11 open access papers mention osa-MIR812s
(18 sentences)

Sequence

61388 reads, 262.0 reads per million, 142 experiments

uggguuuucguguacaacaUGAUCGUUCGUCUUAUUUGAAAAuuuuaugaaaaaauuaaaaaaaucacacauaaaguacuauucauauuuuaucauccaauaauaauaaaaauacuaaucacaaaagaauuuuuaAUAAGACGGACAAUCAAACGUUGGacacagaaauuc
.(((((((.((((.((((.((((.((((((((((((.(((((((((((((.(((((..............................))))).)))).............................))))))))))))))))))))).))))...)))).)))).)))))))

Structure

u       c    a    --a    C            U         -----------------------------    a     uaaaaaaaucacac 
 ggguuuu gugu caac   UGAU GUUCGUCUUAUU GAAAAuuuu                             auga aaaau              a
 ||||||| |||| ||||   |||| |||||||||||| |||||||||                             |||| |||||               
 cuuaaag caca GUUG   ACUA CAGGCAGAAUAa uuuuuaaga                             uacu uuuua              u
-       a    G    CAA    A            -         aaacacuaaucauaaaaauaauaauaacc    a     uacuuaucaugaaa 

Annotation confidence Medium

Genome context

3: 6033231-6033401 [-]

Mature osa-miR812s-5p

• Accession: MIMAT0056271
• Description: Oryza sativa osa-miR812s-5p mature miRNA
• Sequence: 20 - UGAUCGUUCGUCUUAUUUGAAAA - 42
• Evidence: experimental ; unknown

Mature osa-miR812s-3p

• Accession: MIMAT0023267
• Description: Oryza sativa osa-miR812s-3p mature miRNA
• Sequence: 136 - AUAAGACGGACAAUCAAACGUUGG - 159
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207