Stem-loop osa-MIR812q

Accession

MI0019800

Description

Oryza sativa osa-MIR812q precursor miRNA

Literature search

9 open access papers mention osa-MIR812q
(15 sentences)

Sequence

348745 reads, 1194.0 reads per million, 142 experiments

uacuccauccgucucaaaauaagugcaguuuugcacuauucauacuuaacauuugaaCGUUCGUCUUAUUUGAAAAuuuuuuaugauuaguauuuuuauugcuauuagauguuaaaacauaaauaguacuuuaugugugacuaaauauuuucaauuuuuucacaaaauuuucaaAUAAGACGGACAGUCAAACGUUGGguacgaauaucuacggcugcacuuauuuugggacggagguagua
((((((.(((((((((((((((((((((((......(((((.((((((((.(((((..((((((((((((((((((((((.......(((((.......)))))............(((((((......)))))))((((..((((.......))))..))))))))))))))))))))))))))..))))).)))))))).))))).....))))))))))))))))))))))))).))))

Structure

    -  a                       uugcac     a        a     aC                      uuaugauuaguauuuuuauugcuauuagauguuaaaacauaaauaguacuuuaugu    cu    au 
uacu cc uccgucucaaaauaagugcaguu      uauuc uacuuaac uuuga  GUUCGUCUUAUUUGAAAAuuuu                                                        guga  aaau  u
|||| || |||||||||||||||||||||||      ||||| |||||||| |||||  ||||||||||||||||||||||                                                        ||||  ||||  u
auga gg aggcaggguuuuauucacgucgg      auaag augGGUUG AAACU  CAGGCAGAAUAaacuuuuaaaa                                                        cacu  uuua  u
    u  -                       -caucu     c        C     GA                      --------------------------------------------------------    uu    ac 

Annotation confidence Low

Genome context

10: 18223398-18223639 [+]

Mature osa-miR812q-5p

• Accession: MIMAT0056260
• Description: Oryza sativa osa-miR812q-5p mature miRNA
• Sequence: 58 - CGUUCGUCUUAUUUGAAAA - 76
• Evidence: experimental ; unknown

Mature osa-miR812q-3p

• Accession: MIMAT0023255
• Description: Oryza sativa osa-miR812q-3p mature miRNA
• Sequence: 175 - AUAAGACGGACAGUCAAACGUUGG - 198
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207