Stem-loop osa-MIR5801a

Accession

MI0019815

Description

Oryza sativa osa-MIR5801a precursor miRNA

Sequence

26251 reads, 85.0 reads per million, 134 experiments

ucacgauACCAAAUCGUUUUCGAUCGUUGGAuuauccugccgagcuagaucAACGAUCGAAAACGUUUUGGUACUguga
(((((.(((((((.(((((((((((((((....(((..((...))..)))))))))))))))))).))))))).)))))

Structure

     a       U               GAuu   cu  c 
ucacg uACCAAA CGUUUUCGAUCGUUG    auc  gc  
||||| ||||||| |||||||||||||||    |||  || g
agugU AUGGUUU GCAAAAGCUAGCAAc    uag  cg  
     C       U               ----   au  a 

Annotation confidence Low

Genome context

12: 19318211-19318289 [-]

Mature osa-miR5801a-5p

• Accession: MIMAT0023270
• Description: Oryza sativa osa-miR5801a-5p mature miRNA
• Sequence: 8 - ACCAAAUCGUUUUCGAUCGUUGGA - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5801a-3p

• Accession: MIMAT0056273
• Description: Oryza sativa osa-miR5801a-3p mature miRNA
• Sequence: 52 - AACGAUCGAAAACGUUUUGGUACU - 75
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207