Stem-loop osa-MIR5824

Accession

MI0019842

Description

Oryza sativa osa-MIR5824 precursor miRNA

Sequence

13196 reads, 57.0 reads per million, 139 experiments

uuaauagauaacgcaauugacauuuuaucacacguuuaaucAUUCAUCUUAUUUAAAAAAuuuacguaauuauaaucuauuuuauugugaguuguuuuaucacuuaaaguauuuuauucgugauucaaaucuuauguauuuauauaaaauuuuugaauaagaugaauAGUCUGAUAAGAAGUCAAUGGCGUuaucuauuaa
.(((((((((((((.((((((.((((((((.((........((((((((((((((((((.((((.((((..((((..(((((((..((((.........)))).)))))))..)))).(((((........)))))...)))).)))).)))))))))))))))))).)).)))))))).)))))).))))))))))))).

Structure

u             a      a        c  guuuaauc                  A    c    --------------------uu    uc       uu    guu 
 uaauagauaacgc auugac uuuuauca ac        AUUCAUCUUAUUUAAAAA uuua guaa                      auaa  uauuuua  guga   g
 ||||||||||||| |||||| |||||||| ||        |||||||||||||||||| |||| ||||                      ||||  |||||||  ||||   u
 auuaucuauUGCG UAACUG AGAAUAGU UG        uaaguagaauaaguuuuu aaau uauu                      uauu  augaaau  cacu   u
a             G      A        C  -------A                  a    a    uauguauucuaaacuuagugcu    uu       -u    auu 

Annotation confidence Low

Genome context

1: 1761530-1761730 [-]

Mature osa-miR5824-5p

• Accession: MIMAT0056296
• Description: Oryza sativa osa-miR5824-5p mature miRNA
• Sequence: 42 - AUUCAUCUUAUUUAAAAAA - 60
• Evidence: experimental ; unknown

Mature osa-miR5824-3p

• Accession: MIMAT0023297
• Description: Oryza sativa osa-miR5824-3p mature miRNA
• Sequence: 168 - AGUCUGAUAAGAAGUCAAUGGCGU - 191
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207