Stem-loop osa-MIR5826

Accession

MI0019845

Description

Oryza sativa osa-MIR5826 precursor miRNA

Literature search

1 open access papers mention osa-MIR5826
(1 sentences)

Sequence

20420 reads, 72.0 reads per million, 141 experiments

acuaggggcuaaccacucuuuucacuuugagcuaggaauacuugcaagguguuguuuuuuuuucuccuccuagaccuguucuuccucuccccugCUCUCUCUCUCUCUCUCUCauguucuuccucccacuccucucucuccuguuuugguuugagccucaacgugauggugagcaucuccuguuugcgucagcucaugggaugaaacuucugccccaccaugaugguggacagaaaggggaaggagaacucaaggaagaagaacacagguccagagugcaacuucuuacaagaauuccUAGCCCAAAGUGAGAAGAGUGGGUagccccuauu
..(((((((((.(((((((((((((((((.(((((((((.((((.((((.(((((...........(((...((((((((((((...(((.........................(((((((.((((.((.(((.((.((.((((..(((....)))..)))).)).)).)))((((((.((...((....)).)).))))))....(((((..((((((...)))))).))))))))))).)))))))....))).)))))..)))))))..))).))))).)))).)))).))))))))).))))))))))))))))).)))))))))..

Structure

ac         a                 a         a    c    u     uuuuuuuucuc   cua       --     cuc   ccugCUCUCUCUCUCUCUCUCUCau       c    a  -------------------------------------------------------------c   u  c  c    uu   u 
  uaggggcua ccacucuuuucacuuug gcuaggaau cuug aagg guugu           cuc   gaccugu  ucuuc   ucc                         guucuuc uccc cu                                                              cuc cu uc uguu  ggu u
  ||||||||| ||||||||||||||||| ||||||||| |||| |||| |||||           |||   |||||||  |||||   |||                         ||||||| |||| ||                                                              ||| || || ||||  |||  
  auccccgaU GGUGAGAAGAGUGAAAC CGAUccuua gaac uucu caacg           gag   cuggaca  agaag   agg                         caagagg aggg ga                                                              gag gg ag gcaa  ccg g
uu         G                 C         a    a    u     ----------u   -ac       ca     --a   ---------------------aacu       a    -  aagacaggugguaguaccaccccgucuucaaaguaggguacucgacugcguuuguccucuac   u  u  u    cu   a 

Annotation confidence Low

Genome context

11: 12858909-12859240 [+]

Mature osa-miR5826-5p

• Accession: MIMAT0056299
• Description: Oryza sativa osa-miR5826-5p mature miRNA
• Sequence: 95 - CUCUCUCUCUCUCUCUCUC - 113
• Evidence: experimental ; unknown

Mature osa-miR5826-3p

• Accession: MIMAT0023300
• Description: Oryza sativa osa-miR5826-3p mature miRNA
• Sequence: 299 - UAGCCCAAAGUGAGAAGAGUGGGU - 322
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207