Stem-loop osa-MIR5806

Accession

MI0019822

Description

Oryza sativa osa-MIR5806 precursor miRNA

Literature search

3 open access papers mention osa-MIR5806
(3 sentences)

Sequence

11955 reads, 106.0 reads per million, 48 experiments

ggguccgagcugcauuuggauuagccgauCUGGAAGUUAGCAAGUUAGAAACAGGCAAAGACAAUGACGGCucuuggaugu
..((((((((((((((.(..((.(((..(((((...........)))))....))).))..))))).))))))..))))..

Structure

gg    --      -    u ga  a   --ga     AAGU 
  gucc  gagcug cauu g  uu gcc    uCUGG    U
  ||||  |||||| |||| |  || |||    |||||    A
  uagg  cuCGGC GUAA C  AA CGG    AGAUU    G
ug    uu      A    - AG  A   ACAA     GAAC 

Annotation confidence Low

Genome context

6: 24708626-24708706 [+]

Mature osa-miR5806-5p

• Accession: MIMAT0056280
• Description: Oryza sativa osa-miR5806-5p mature miRNA
• Sequence: 30 - CUGGAAGUUAGCAAGUUAGAA - 50
• Evidence: experimental ; unknown

Mature osa-miR5806-3p

• Accession: MIMAT0023277
• Description: Oryza sativa osa-miR5806-3p mature miRNA
• Sequence: 51 - ACAGGCAAAGACAAUGACGGC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207